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  5. Cba_g12245

Cba_g12245


Description : not classified & original description: none


Gene families : OG0000937 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000937_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g12245
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Aev_g08851 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g21406 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g31776 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g14825 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g33658 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27920 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13636 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20172 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene15782.t1 Aspi01Gene15782 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene66998.t1 Aspi01Gene66998 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0045.g029852 No alias not classified & original description: CDS=22-3432 0.03 OrthoFinder output from all 47 species
Azfi_s0460.g072050 LNG1 not classified & original description: CDS=221-3385 0.03 OrthoFinder output from all 47 species
Ceric.13G047000.1 Ceric.13G047000 not classified & original description: pacid=50636886... 0.04 OrthoFinder output from all 47 species
Dac_g21763 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g01996 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05090 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g06162 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09226 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_21932 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_32954 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10433891g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_9297837g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_9370877g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp1g18360.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp8g14870.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g15048 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g15321 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17421 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g41732 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008011 No alias not classified & original description: CDS=1-828 0.02 OrthoFinder output from all 47 species
Sam_g09091 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo405421 No alias No description available 0.02 OrthoFinder output from all 47 species
Smo416845 No alias No description available 0.02 OrthoFinder output from all 47 species
Spa_g39975 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g41427 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g52248 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55806 LNG1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g10611 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g12819 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e002957_P004 Zm00001e002957 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR025486 DUF4378 908 1076
IPR032795 DUF3741-assoc 127 143
IPR022212 DUF3741 258 285
No external refs found!