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  5. Cba_g12122

Cba_g12122


Description : BBX class-IV transcription factor & original description: none


Gene families : OG0000403 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000403_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g12122

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00215760 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
AMTR_s00021p00250410 LZF1, STH3,... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AT1G06040 STO B-box zinc finger family protein 0.04 OrthoFinder output from all 47 species
AT1G75540 STH2 salt tolerance homolog2 0.02 OrthoFinder output from all 47 species
Adi_g081465 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g081474 STO BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g11974 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g15657 No alias BBX class-IV transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g11226 STO BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g24013 STO BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g07621 STO BBX class-IV transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g20277 No alias BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01014097001 LZF1, STH3, DBB3 RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
Lfl_g11174 STH BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g22003 No alias BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g15051 STO BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010219 STO BBX class-IV transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0212.g025956 LZF1, STH3, DBB3 BBX class-IV transcription factor & original... 0.03 OrthoFinder output from all 47 species
Solyc01g110180.4.1 Solyc01g110180 transcription factor (BBX-DBB) 0.03 OrthoFinder output from all 47 species
Spa_g39275 No alias BBX class-IV transcription factor & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 54 92
IPR000315 Znf_B-box 3 42
No external refs found!