Cba_g11427 (ARF6)


Aliases : ARF6

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g11427

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00182820 ARF16,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AMTR_s00021p00221770 ARF1,... RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
AT1G59750 ARF1 auxin response factor 1 0.02 OrthoFinder output from all 47 species
Adi_g061151 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g27966 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32730 TIR5, MSG1,... ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27918 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene33428.t2 HSS, ARF1-BP,... ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene45721.t2 ARF6, Aspi01Gene45721 ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.20G087500.1 ARF1, Ceric.20G087500 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g05759 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g32674 TIR5, MSG1,... ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g11626 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g01740 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08691 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18587 ARF16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g22354 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01020805001 ARF6 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01021128001 ARF3, ETT RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01021552001 ARF6 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
GSVIVT01027166001 ARF11 RNA biosynthesis.transcriptional activation.B3... 0.05 OrthoFinder output from all 47 species
GSVIVT01035204001 ARF8, ATARF8 RNA biosynthesis.transcriptional activation.B3... 0.05 OrthoFinder output from all 47 species
GSVIVT01035205001 ARF8, ATARF8 Auxin response factor 12 OS=Oryza sativa subsp. japonica 0.05 OrthoFinder output from all 47 species
Gb_15247 HSS, ARF1-BP, ARF2, ORE14 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os04g59430.1 ARF17, LOC_Os04g59430 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os05g43920.1 ARF3, ETT, LOC_Os05g43920 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os11g32110.1 HSS, ARF1-BP,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Len_g20412 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
MA_566086g0010 ARF6 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Mp1g12750.1 ARF6 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Msp_g14175 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g39711 ARF6 transcriptional repressor *(IAA/AUX) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g50454 TIR5, MSG1,... ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g27871 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e003229_P002 ARF6, Zm00001e003229 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e003591_P003 ARF19, IAA22,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e006577_P003 ARF8, ATARF8,... transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
Zm00001e014833_P002 ARF1, Zm00001e014833 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e018126_P002 ARF6, Zm00001e018126 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e020205_P004 ARF3, ETT, Zm00001e020205 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e041910_P003 ARF8, ATARF8,... transcription factor (ARF) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004470 malic enzyme activity IEP HCCA
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016615 malate dehydrogenase activity IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 131 232
IPR010525 ARF_dom 257 340
IPR033389 AUX/IAA_dom 842 885
No external refs found!