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  5. Cba_g10923

Cba_g10923


Description : scaffold nucleoporin of nuclear pore complex *(RAE1) & original description: none


Gene families : OG0004854 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004854_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g10923

Target Alias Description ECC score Gene Family Method Actions
Adi_g009220 No alias scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.03 OrthoFinder output from all 47 species
Ceric.10G026000.1 Ceric.10G026000 scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.02 OrthoFinder output from all 47 species
Ceric.33G060300.1 Ceric.33G060300 scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.08 OrthoFinder output from all 47 species
GSVIVT01029758001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
Ore_g03634 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02489 No alias scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.03 OrthoFinder output from all 47 species
Ppi_g12839 No alias scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0092.g018888 No alias scaffold nucleoporin of nuclear pore complex *(RAE1) &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030955 potassium ion binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0031420 alkali metal ion binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 111 140
IPR001680 WD40_repeat 27 53
No external refs found!