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  5. Cba_g10893

Cba_g10893 (EMB2776, LIS)


Aliases : EMB2776, LIS

Description : component *(PRPF4) of spliceosomal U4/U6 snRNP & original description: none


Gene families : OG0003984 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003984_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g10893

Target Alias Description ECC score Gene Family Method Actions
Adi_g080388 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.02 OrthoFinder output from all 47 species
Als_g01906 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.03 OrthoFinder output from all 47 species
Azfi_s0619.g079557 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.03 OrthoFinder output from all 47 species
Ceric.09G088700.1 EMB2776, LIS,... component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.04 OrthoFinder output from all 47 species
Cre16.g662852 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01033551001 EMB2776, LIS RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Ore_g43395 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.04 OrthoFinder output from all 47 species
Pir_g09580 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR014906 PRP4-like 180 207
IPR001680 WD40_repeat 439 470
IPR001680 WD40_repeat 320 345
IPR001680 WD40_repeat 560 596
IPR001680 WD40_repeat 517 555
IPR001680 WD40_repeat 390 428
IPR001680 WD40_repeat 352 387
IPR001680 WD40_repeat 478 512
No external refs found!