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  5. Cba_g10042

Cba_g10042 (AtRH36, SWA3, RH36)


Aliases : AtRH36, SWA3, RH36

Description : SSU processome assembly factor *(SWA3) & original description: none


Gene families : OG0001703 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001703_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g10042

Target Alias Description ECC score Gene Family Method Actions
AT1G16280 AtRH36, SWA3, RH36 RNA helicase 36 0.02 OrthoFinder output from all 47 species
Adi_g103437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08732 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cre12.g505200 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Lfl_g08155 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp1g19410.1 AtRH36, SWA3, RH36 SSU processome assembly factor (SWA3) 0.02 OrthoFinder output from all 47 species
Mp4g20180.1 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Spa_g11648 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e013281_P004 Zm00001e013281 DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 74 242
IPR001650 Helicase_C 283 389
No external refs found!