Cba_g10021 (NFD03, HMGB3, NFD3)


Aliases : NFD03, HMGB3, NFD3

Description : DNA bending architectural protein *(HMG-B) & original description: none


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g10021
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00093p00057150 evm_27.TU.AmTr_v1... High mobility group B protein 6 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT2G17560 NFD4, HMGB4, NFD04 high mobility group B4 0.04 OrthoFinder output from all 47 species
Adi_g007317 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Adi_g012117 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Adi_g018094 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Adi_g080941 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Adi_g080942 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Adi_g124291 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Ala_g04363 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Ala_g24042 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g28166 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Als_g00483 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Als_g10080 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Als_g13137 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Als_g13580 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Als_g44054 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Aob_g05660 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Aob_g30896 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06071 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Aop_g13958 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Aop_g23124 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Aop_g38218 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Aop_g48668 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene12485.t1 NFD03, HMGB3,... DNA bending architectural protein *(HMG-B) & original... 0.07 OrthoFinder output from all 47 species
Aspi01Gene15766.t1 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene15766.t2 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.08 OrthoFinder output from all 47 species
Aspi01Gene22053.t1 HMGB6, Aspi01Gene22053 DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Aspi01Gene22135.t1 NFD03, HMGB3,... DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Aspi01Gene33539.t1 NFD03, HMGB3,... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene57132.t1 Aspi01Gene57132 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G026600.1 HMGB6, Ceric.03G026600 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Ceric.23G068700.1 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001339.6 NFD2, HMG BETA... No description available 0.02 OrthoFinder output from all 47 species
Cre06.g261450 ATHMG, HMG, SSRP1, NFD No description available 0.02 OrthoFinder output from all 47 species
Dac_g07597 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Dac_g07598 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Dac_g12415 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Dac_g19456 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Dac_g20756 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Dac_g44453 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Dde_g04223 HMGB5, NFD5, NFD05, HMGD DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01019504001 No alias High mobility group B protein 13 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_32435 HMGB6 High mobility group B protein 7 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Gb_34784 HMGB6 High mobility group B protein 7 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_37400 No alias High mobility group B protein 13 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os02g15810.1 LOC_Os02g15810 High mobility group B protein 13 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os09g37910.1 NFD2, HMG BETA... HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 99.4) 0.03 OrthoFinder output from all 47 species
Len_g16826 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Len_g21317 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Lfl_g05840 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Lfl_g24387 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g24536 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
MA_10436440g0030 NFD03, HMGB3, NFD3 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_783123g0010 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_86565g0010 HMGB6 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp2g12330.1 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Msp_g01263 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.08 OrthoFinder output from all 47 species
Msp_g38531 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.07 OrthoFinder output from all 47 species
Nbi_g12748 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Nbi_g22023 NFD4, HMGB4, NFD04 DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Pir_g44031 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Pp3c11_8530V3.1 Pp3c11_8530 HMG (high mobility group) box protein 0.02 OrthoFinder output from all 47 species
Ppi_g04305 NFD1, HMGB1 DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Ppi_g61736 No alias DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006223 NFD2, HMG BETA... not classified & original description: CDS=1-750 0.02 OrthoFinder output from all 47 species
Sam_g17368 No alias DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Sam_g27294 No alias DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Sam_g31468 No alias DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Sam_g36464 No alias DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Sam_g40555 No alias DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Solyc02g082700.3.1 NFD2, HMG BETA... HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 82.0) 0.02 OrthoFinder output from all 47 species
Solyc04g008820.3.1 HMGB6, Solyc04g008820 High mobility group B protein 7 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc08g082070.3.1 Solyc08g082070 High mobility group B protein 6 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g04270 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Spa_g10432 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.07 OrthoFinder output from all 47 species
Spa_g15059 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Spa_g41182 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g00083 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Tin_g03032 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Tin_g07416 HMGB5, NFD5, NFD05, HMGD DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Tin_g44303 NFD4, HMGB4, NFD04 DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Tin_g45467 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e014266_P001 Zm00001e014266 High mobility group B protein 6 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e024274_P002 HMGB6, Zm00001e024274 High mobility group B protein 7 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 26 95
No external refs found!