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  5. Cba_g09256

Cba_g09256


Description : not classified & original description: none


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g09256

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00065p00083440 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00067p00185510 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Adi_g013860 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g054784 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g059149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060246 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g074128 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g102181 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g116756 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g01883 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g02499 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g08530 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g24129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26133 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g50168 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g64152 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06497 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08911 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g12260 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g16236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18512.t1 Aspi01Gene18512 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0004.g008625 No alias not classified & original description: CDS=712-1971 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g010823 No alias not classified & original description: CDS=686-1789 0.03 OrthoFinder output from all 47 species
Azfi_s0024.g020434 No alias not classified & original description: CDS=421-1668 0.03 OrthoFinder output from all 47 species
Azfi_s0033.g025010 No alias not classified & original description: CDS=262-1737 0.02 OrthoFinder output from all 47 species
Azfi_s0149.g053226 No alias not classified & original description: CDS=547-1935 0.03 OrthoFinder output from all 47 species
Azfi_s0195.g057243 No alias not classified & original description: CDS=263-1516 0.03 OrthoFinder output from all 47 species
Ceric.04G042300.1 Ceric.04G042300 not classified & original description: pacid=50630995... 0.03 OrthoFinder output from all 47 species
Ceric.12G066500.1 Ceric.12G066500 not classified & original description: pacid=50602160... 0.04 OrthoFinder output from all 47 species
Ceric.14G090500.1 Ceric.14G090500 not classified & original description: pacid=50634831... 0.02 OrthoFinder output from all 47 species
Ceric.19G061100.1 Ceric.19G061100 not classified & original description: pacid=50575703... 0.05 OrthoFinder output from all 47 species
Ceric.24G054300.1 Ceric.24G054300 not classified & original description: pacid=50629415... 0.03 OrthoFinder output from all 47 species
Ceric.36G044000.1 Ceric.36G044000 not classified & original description: pacid=50569069... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001130.27 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g01601 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g04645 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02177 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03771 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_04294 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_33012 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_33485 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os02g12850.1 LOC_Os02g12850 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os06g37000.2 LOC_Os06g37000 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os10g33230.1 LOC_Os10g33230 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Len_g02314 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g08463 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g09670 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g13554 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g17314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g32654 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06009 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06511 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g10917 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g12062 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_141102g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_473g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_93349g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g10831 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g22774 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g00898 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02394 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g31234 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g00523 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g05992 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g05996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09717 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g17780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20108 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g08248 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g17528 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g20248 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c26_4470V3.1 Pp3c26_4470 RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Pp3c4_17440V3.1 Pp3c4_17440 RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Ppi_g06905 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007884 No alias not classified & original description: CDS=207-1496 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011007 No alias not classified & original description: CDS=1206-2705 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014397 No alias not classified & original description: CDS=1935-3293 0.03 OrthoFinder output from all 47 species
Sam_g15340 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25944 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37589 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo101375 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Smo172407 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc02g093340.3.1 Solyc02g093340 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc03g005680.3.1 Solyc03g005680 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc03g121710.2.1 Solyc03g121710 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc07g045240.3.1 Solyc07g045240 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Solyc09g090520.3.1 Solyc09g090520 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Spa_g07882 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g11285 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g21333 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g01925 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07867 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e011540_P001 Zm00001e011540 RNA-binding protein 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e014461_P003 Zm00001e014461 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e024336_P003 Zm00001e024336 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e024934_P002 Zm00001e024934 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Zm00001e030652_P001 Zm00001e030652 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e037155_P004 Zm00001e037155 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 110 175
IPR000504 RRM_dom 8 66
No external refs found!