- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : not classified & original description: none
Gene families : OG0002889 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002889_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cba_g08553 | |
| Cluster | HCCA: Cluster_10 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00071p00187330 | evm_27.TU.AmTr_v1... | Prolycopene isomerase, chloroplastic OS=Daucus carota | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g052232 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aev_g49491 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g06469 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g07926 | No alias | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Aop_g33225 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0026.g023399 | No alias | not classified & original description: CDS=135-2003 | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.23G052400.1 | Ceric.23G052400 | not classified & original description: pacid=50610225... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.32G057300.1 | Ceric.32G057300 | not classified & original description: pacid=50597506... | 0.03 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00001258.10 | No alias | No description available | 0.02 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00020723.8 | No alias | No description available | 0.02 | OrthoFinder output from all 47 species | |
| Cre16.g674950 | No alias | Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum | 0.01 | OrthoFinder output from all 47 species | |
| Dac_g23383 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g10069 | No alias | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Dcu_g14193 | No alias | not classified & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Dde_g06829 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g15650 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os03g62510.1 | LOC_Os03g62510 | Prolycopene isomerase, chloroplastic OS=Daucus carota... | 0.06 | OrthoFinder output from all 47 species | |
| Len_g21505 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g05426 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_10428345g0020 | No alias | Prolycopene isomerase, chloroplastic OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10428660g0010 | No alias | Prolycopene isomerase 1, chloroplastic OS=Oncidium... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g08605 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g10834 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0052.g014061 | No alias | not classified & original description: CDS=115-1746 | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g07020 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Smo229587 | No alias | Prolycopene isomerase 1, chloroplastic OS=Oncidium... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g07332 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g10638 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Tin_g12165 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g23774 | No alias | not classified & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Zm00001e011669_P002 | Zm00001e011669 | Prolycopene isomerase, chloroplastic OS=Daucus carota... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
| BP | GO:0006536 | glutamate metabolic process | IEP | HCCA |
| BP | GO:0006537 | glutamate biosynthetic process | IEP | HCCA |
| BP | GO:0006720 | isoprenoid metabolic process | IEP | HCCA |
| BP | GO:0006820 | monoatomic anion transport | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0008299 | isoprenoid biosynthetic process | IEP | HCCA |
| BP | GO:0008610 | lipid biosynthetic process | IEP | HCCA |
| BP | GO:0008652 | amino acid biosynthetic process | IEP | HCCA |
| BP | GO:0009064 | glutamine family amino acid metabolic process | IEP | HCCA |
| BP | GO:0009084 | glutamine family amino acid biosynthetic process | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009522 | photosystem I | IEP | HCCA |
| CC | GO:0009523 | photosystem II | IEP | HCCA |
| CC | GO:0009538 | photosystem I reaction center | IEP | HCCA |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| MF | GO:0015930 | glutamate synthase activity | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| BP | GO:0016053 | organic acid biosynthetic process | IEP | HCCA |
| MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
| CC | GO:0019898 | extrinsic component of membrane | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| MF | GO:0035673 | oligopeptide transmembrane transporter activity | IEP | HCCA |
| MF | GO:0042887 | amide transmembrane transporter activity | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
| BP | GO:0043648 | dicarboxylic acid metabolic process | IEP | HCCA |
| BP | GO:0043650 | dicarboxylic acid biosynthetic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044255 | cellular lipid metabolic process | IEP | HCCA |
| BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
| BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | HCCA |
| CC | GO:0098796 | membrane protein complex | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| BP | GO:1901605 | alpha-amino acid metabolic process | IEP | HCCA |
| BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | HCCA |
| MF | GO:1904680 | peptide transmembrane transporter activity | IEP | HCCA |
| CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |