Description : not classified & original description: none
Gene families : OG0000162 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0000162_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Lfl_g31497 | |
Cluster | HCCA: Cluster_28 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00102p00106890 | PSBD,... | Photosystem II D2 protein OS=Amborella trichopoda | 0.05 | OrthoFinder output from all 39 species | |
AMTR_s01196p00010070 | PSBC,... | Photosystem II CP43 reaction center protein OS=Carica papaya | 0.05 | OrthoFinder output from all 39 species | |
AMTR_s04036p00005710 | evm_27.TU.AmTr_v1... | Photosystem II CP43 reaction center protein... | 0.05 | OrthoFinder output from all 39 species | |
ATCG00270 | PSBD | photosystem II reaction center protein D | 0.04 | OrthoFinder output from all 39 species | |
ATCG00280 | PSBC | photosystem II reaction center protein C | 0.06 | OrthoFinder output from all 39 species | |
Adi_g101196 | PSBD | component *(PsbD/D2) of PS-II reaction center complex &... | 0.01 | OrthoFinder output from all 39 species | |
Aev_g04878 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.12 | OrthoFinder output from all 39 species | |
Aev_g33560 | PSBD | component *(PsbD/D2) of PS-II reaction center complex &... | 0.13 | OrthoFinder output from all 39 species | |
Ala_g09125 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.04 | OrthoFinder output from all 39 species | |
Als_g01018 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.13 | OrthoFinder output from all 39 species | |
Als_g05104 | PSBD | component *(PsbD/D2) of PS-II reaction center complex &... | 0.14 | OrthoFinder output from all 39 species | |
Aob_g06735 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.12 | OrthoFinder output from all 39 species | |
Aob_g25472 | PSBD | component *(PsbD/D2) of PS-II reaction center complex &... | 0.12 | OrthoFinder output from all 39 species | |
Aop_g01391 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.01 | OrthoFinder output from all 39 species | |
Cba_g32229 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.1 | OrthoFinder output from all 39 species | |
Cba_g74869 | PSBD | component *(PsbD/D2) of PS-II reaction center complex &... | 0.07 | OrthoFinder output from all 39 species | |
Ceric.02G013100.1 | PSBC, Ceric.02G013100 | component *(PsbC/CP43) of PS-II reaction center complex... | 0.1 | OrthoFinder output from all 39 species | |
Ceric.02G016000.1 | PSBD, Ceric.02G016000 | component *(PsbD/D2) of PS-II reaction center complex &... | 0.11 | OrthoFinder output from all 39 species | |
Ceric.07G101200.1 | PSBC, Ceric.07G101200 | not classified & original description: pacid=50626880... | 0.01 | OrthoFinder output from all 39 species | |
Ceric.11G046100.1 | PSBD, Ceric.11G046100 | not classified & original description: pacid=50594971... | 0.01 | OrthoFinder output from all 39 species | |
Ceric.12G058500.1 | PSBC, Ceric.12G058500 | not classified & original description: pacid=50601680... | 0.09 | OrthoFinder output from all 39 species | |
Ceric.12G087100.1 | PSBC, Ceric.12G087100 | not classified & original description: pacid=50602384... | 0.09 | OrthoFinder output from all 39 species | |
Ceric.1Z022800.1 | PSBD, Ceric.1Z022800 | component *(PsbD/D2) of PS-II reaction center complex &... | 0.04 | OrthoFinder output from all 39 species | |
Ceric.1Z161200.1 | PSBC, Ceric.1Z161200 | component *(PsbC/CP43) of PS-II reaction center complex... | 0.08 | OrthoFinder output from all 39 species | |
Ceric.23G081300.1 | PSBD, Ceric.23G081300 | component *(PsbD/D2) of PS-II reaction center complex &... | 0.03 | OrthoFinder output from all 39 species | |
Ceric.24G024100.1 | PSBC, Ceric.24G024100 | component *(PsbC/CP43) of PS-II reaction center complex... | 0.12 | OrthoFinder output from all 39 species | |
Ceric.29G032200.1 | PSBC, Ceric.29G032200 | not classified & original description: pacid=50625880... | 0.02 | OrthoFinder output from all 39 species | |
Ceric.29G032300.1 | PSBD, Ceric.29G032300 | component *(PsbD/D2) of PS-II reaction center complex &... | 0.09 | OrthoFinder output from all 39 species | |
Ceric.33G023300.1 | PSBC, Ceric.33G023300 | component *(PsbC/CP43) of PS-II reaction center complex... | 0.04 | OrthoFinder output from all 39 species | |
Ceric.33G023400.1 | PSBD, Ceric.33G023400 | not classified & original description: pacid=50607236... | 0.06 | OrthoFinder output from all 39 species | |
Ceric.33G053900.1 | PSBC, Ceric.33G053900 | not classified & original description: pacid=50607717... | 0.04 | OrthoFinder output from all 39 species | |
Ceric.36G045000.1 | PSBC, Ceric.36G045000 | not classified & original description: pacid=50568984... | 0.08 | OrthoFinder output from all 39 species | |
Ceric.38G009700.1 | PSBC, Ceric.38G009700 | component *(PsbC/CP43) of PS-II reaction center complex... | 0.1 | OrthoFinder output from all 39 species | |
Ceric.38G040900.1 | PSBC, Ceric.38G040900 | not classified & original description: pacid=50580441... | 0.03 | OrthoFinder output from all 39 species | |
Dac_g04293 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.1 | OrthoFinder output from all 39 species | |
Dcu_g10666 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.14 | OrthoFinder output from all 39 species | |
Dde_g15702 | PSBD | component *(PsbD/D2) of PS-II reaction center complex &... | 0.01 | OrthoFinder output from all 39 species | |
Dde_g30384 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.07 | OrthoFinder output from all 39 species | |
GSVIVT01006662001 | PSBC | Photosystem II CP43 reaction center protein OS=Platanus... | 0.04 | OrthoFinder output from all 39 species | |
GSVIVT01010924001 | PSBD | Photosystem II D2 protein OS=Vitis vinifera | 0.01 | OrthoFinder output from all 39 species | |
GSVIVT01027074001 | No alias | No description available | 0.01 | OrthoFinder output from all 39 species | |
GSVIVT01029661001 | PSBD | Photosystem II D2 protein OS=Vitis vinifera | 0.04 | OrthoFinder output from all 39 species | |
Gb_03041 | No alias | no hits & (original description: none) | 0.07 | OrthoFinder output from all 39 species | |
Gb_06825 | PSBD | no description available(sp|q85ac9|psbd_antag : 421.0) | 0.04 | OrthoFinder output from all 39 species | |
Gb_06826 | PSBC | Photosystem II CP43 reaction center protein OS=Cycas... | 0.07 | OrthoFinder output from all 39 species | |
Gb_09041 | PSBC | component PsbD/D2 of PS-II reaction center complex | 0.08 | OrthoFinder output from all 39 species | |
Gb_11363 | PSBD | component PsbD/D2 of PS-II reaction center complex | 0.08 | OrthoFinder output from all 39 species | |
Gb_11943 | PSBC | Photosystem II CP43 reaction center protein... | 0.07 | OrthoFinder output from all 39 species | |
Gb_19153 | PSBC | Photosystem II CP43 reaction center protein... | 0.07 | OrthoFinder output from all 39 species | |
Gb_19166 | PSBC | Photosystem II CP43 reaction center protein... | 0.05 | OrthoFinder output from all 39 species | |
Gb_20149 | PSBD | component PsbD/D2 of PS-II reaction center complex | 0.02 | OrthoFinder output from all 39 species | |
Gb_22672 | PSBC | Photosystem II CP43 reaction center protein... | 0.07 | OrthoFinder output from all 39 species | |
Gb_41667 | PSBC | component PsbD/D2 of PS-II reaction center complex.... | 0.05 | OrthoFinder output from all 39 species | |
LOC_Os02g24632.1 | PSBC, LOC_Os02g24632 | component PsbC/CP43 of PS-II reaction center complex | 0.09 | OrthoFinder output from all 39 species | |
LOC_Os02g24634.1 | PSBD, LOC_Os02g24634 | component PsbD/D2 of PS-II reaction center complex | 0.08 | OrthoFinder output from all 39 species | |
LOC_Os04g16872.1 | PSBD, LOC_Os04g16872 | component PsbD/D2 of PS-II reaction center complex | 0.09 | OrthoFinder output from all 39 species | |
LOC_Os04g16874.1 | PSBC, LOC_Os04g16874 | component PsbC/CP43 of PS-II reaction center complex | 0.09 | OrthoFinder output from all 39 species | |
LOC_Os10g21212.1 | PSBC, LOC_Os10g21212 | component PsbC/CP43 of PS-II reaction center complex | 0.1 | OrthoFinder output from all 39 species | |
Len_g16437 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.03 | OrthoFinder output from all 39 species | |
Len_g50353 | PSBD | component *(PsbD/D2) of PS-II reaction center complex &... | 0.04 | OrthoFinder output from all 39 species | |
Msp_g00655 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.04 | OrthoFinder output from all 39 species | |
Msp_g27629 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 39 species | |
Msp_g30475 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 39 species | |
Nbi_g01251 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.05 | OrthoFinder output from all 39 species | |
Nbi_g40674 | PSBD | component *(PsbD/D2) of PS-II reaction center complex &... | 0.03 | OrthoFinder output from all 39 species | |
Ore_g02105 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.13 | OrthoFinder output from all 39 species | |
Ore_g12399 | PSBD | component *(PsbD/D2) of PS-II reaction center complex &... | 0.13 | OrthoFinder output from all 39 species | |
Pir_g03376 | PSBD | component *(PsbD/D2) of PS-II reaction center complex &... | 0.01 | OrthoFinder output from all 39 species | |
Pir_g10941 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.01 | OrthoFinder output from all 39 species | |
Pnu_g00846 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.04 | OrthoFinder output from all 39 species | |
Pnu_g14362 | PSBD | component *(PsbD/D2) of PS-II reaction center complex &... | 0.04 | OrthoFinder output from all 39 species | |
Ppi_g01211 | PSBD | component *(PsbD/D2) of PS-II reaction center complex &... | 0.12 | OrthoFinder output from all 39 species | |
Ppi_g02376 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.12 | OrthoFinder output from all 39 species | |
Sacu_v1.1_s0002.g001231 | PSBD | not classified & original description: CDS=1-297 | 0.05 | OrthoFinder output from all 39 species | |
Sacu_v1.1_s0004.g002255 | PSBC | not classified & original description: CDS=1-627 | 0.05 | OrthoFinder output from all 39 species | |
Sacu_v1.1_s0010.g004817 | PSBC | not classified & original description: CDS=1-717 | 0.05 | OrthoFinder output from all 39 species | |
Sacu_v1.1_s0015.g006637 | PSBC | not classified & original description: CDS=1-525 | 0.05 | OrthoFinder output from all 39 species | |
Sacu_v1.1_s0015.g006638 | PSBC | not classified & original description: CDS=1-420 | 0.05 | OrthoFinder output from all 39 species | |
Sam_g01382 | No alias | component *(PsbD/D2) of PS-II reaction center complex &... | 0.04 | OrthoFinder output from all 39 species | |
Sam_g14692 | No alias | component *(PsbC/CP43) of PS-II reaction center complex... | 0.1 | OrthoFinder output from all 39 species | |
Smo137689 | PSBC | Photosynthesis.photophosphorylation.photosystem II.PS-II... | 0.08 | OrthoFinder output from all 39 species | |
Smo137879 | PSBD | Photosynthesis.photophosphorylation.photosystem II.PS-II... | 0.06 | OrthoFinder output from all 39 species | |
Solyc00g230070.1.1 | PSBC, Solyc00g230070 | Photosystem II CP43 reaction center protein OS=Lepidium... | 0.01 | OrthoFinder output from all 39 species | |
Solyc00g500054.1.1 | PSBC, Solyc00g500054 | component PsbD/D2 of PS-II reaction center complex.... | 0.08 | OrthoFinder output from all 39 species | |
Solyc00g500136.1.1 | PSBC, Solyc00g500136 | component PsbD/D2 of PS-II reaction center complex.... | 0.08 | OrthoFinder output from all 39 species | |
Solyc00g500206.1.1 | PSBC, Solyc00g500206 | component PsbD/D2 of PS-II reaction center complex.... | 0.09 | OrthoFinder output from all 39 species | |
Solyc07g009000.1.1 | PSBC, Solyc07g009000 | Photosystem II CP43 reaction center protein OS=Coffea... | 0.03 | OrthoFinder output from all 39 species | |
Solyc08g065370.1.1 | PSBD, Solyc08g065370 | Photosystem II D2 protein OS=Tupiella akineta... | 0.02 | OrthoFinder output from all 39 species | |
Solyc10g047410.1.1 | PSBC, Solyc10g047410 | Photosystem II CP43 reaction center protein OS=Atropa... | 0.01 | OrthoFinder output from all 39 species | |
Spa_g04637 | PSBD | component *(PsbD/D2) of PS-II reaction center complex &... | 0.07 | OrthoFinder output from all 39 species | |
Spa_g13347 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.15 | OrthoFinder output from all 39 species | |
Tin_g01229 | PSBC | component *(PsbC/CP43) of PS-II reaction center complex... | 0.02 | OrthoFinder output from all 39 species | |
Tin_g01230 | PSBD | component *(PsbD/D2) of PS-II reaction center complex &... | 0.02 | OrthoFinder output from all 39 species | |
Zm00001e015953_P001 | PSBD, Zm00001e015953 | component PsbD/D2 of PS-II reaction center complex | 0.08 | OrthoFinder output from all 39 species | |
Zm00001e042042_P001 | PSBC, Zm00001e042042 | Photosystem II CP43 reaction center protein OS=Sorghum... | 0.08 | OrthoFinder output from all 39 species | |
Zm00001e042043_P001 | PSBD, Zm00001e042043 | Photosystem II D2 protein OS=Angiopteris evecta... | 0.06 | OrthoFinder output from all 39 species | |
Zm00001e042109_P001 | PSBD, Zm00001e042109 | Photosystem II D2 protein OS=Angiopteris evecta... | 0.06 | OrthoFinder output from all 39 species | |
Zm00001e042157_P001 | PSBC, Zm00001e042157 | Photosystem II CP43 reaction center protein OS=Sorghum... | 0.05 | OrthoFinder output from all 39 species | |
Zm00001e042158_P001 | PSBD, Zm00001e042158 | Photosystem II D2 protein OS=Angiopteris evecta... | 0.06 | OrthoFinder output from all 39 species | |
Zm00001e042172_P001 | Zm00001e042172 | no hits & (original description: none) | 0.08 | OrthoFinder output from all 39 species | |
Zm00001e042173_P001 | PSBD, Zm00001e042173 | Photosystem II D2 protein OS=Angiopteris evecta... | 0.06 | OrthoFinder output from all 39 species | |
Zm00001e042269_P001 | PSBC, Zm00001e042269 | Photosystem II CP43 reaction center protein OS=Sorghum... | 0.05 | OrthoFinder output from all 39 species | |
Zm00001e042427_P001 | PSBD, Zm00001e042427 | component PsbD/D2 of PS-II reaction center complex | 0.08 | OrthoFinder output from all 39 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000287 | magnesium ion binding | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
BP | GO:0006091 | generation of precursor metabolites and energy | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
MF | GO:0009055 | electron transfer activity | IEP | HCCA |
CC | GO:0009521 | photosystem | IEP | HCCA |
CC | GO:0009579 | thylakoid | IEP | HCCA |
BP | GO:0009767 | photosynthetic electron transport chain | IEP | HCCA |
BP | GO:0009772 | photosynthetic electron transport in photosystem II | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0015979 | photosynthesis | IEP | HCCA |
CC | GO:0016020 | membrane | IEP | HCCA |
MF | GO:0016168 | chlorophyll binding | IEP | HCCA |
MF | GO:0016830 | carbon-carbon lyase activity | IEP | HCCA |
MF | GO:0016831 | carboxy-lyase activity | IEP | HCCA |
MF | GO:0016984 | ribulose-bisphosphate carboxylase activity | IEP | HCCA |
BP | GO:0019684 | photosynthesis, light reaction | IEP | HCCA |
BP | GO:0022900 | electron transport chain | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
MF | GO:0045156 | electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | IEP | HCCA |
MF | GO:0046906 | tetrapyrrole binding | IEP | HCCA |
CC | GO:0098796 | membrane protein complex | IEP | HCCA |
CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
No InterPro domains available for this sequence
No external refs found! |