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  5. Cba_g08130

Cba_g08130


Description : component *(uS5c) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0006947 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006947_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g08130
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AT2G33800 No alias Ribosomal protein S5 family protein 0.03 OrthoFinder output from all 47 species
Adi_g042973 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aop_g08706 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Azfi_s0164.g054257 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.31G051100.1 Ceric.31G051100 component *(uS5c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cre16.g659950 No alias Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Dcu_g02392 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Dde_g01276 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
GSVIVT01021083001 No alias Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
Gb_10529 No alias component psRPS5 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
LOC_Os03g34040.1 LOC_Os03g34040 component psRPS5 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
MA_10435489g0010 No alias component psRPS5 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
MA_10435489g0020 No alias component psRPS5 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Mp8g10330.1 No alias component psRPS5 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Msp_g10187 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ore_g26046 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ppi_g02748 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Solyc02g077990.3.1 Solyc02g077990 component psRPS5 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Tin_g14998 No alias component *(uS5c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Zm00001e004331_P004 Zm00001e004331 component psRPS5 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004784 superoxide dismutase activity IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005324 Ribosomal_S5_C 197 267
IPR013810 Ribosomal_S5_N 121 184
No external refs found!