Cba_g07746

Description : RNA helicase component *(MTR4) of TRAMP nucleolar regulation complex & original description: none

Gene families : OG0000709 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000709_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g07746

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00206820	evm_27.TU.AmTr_v1...	RNA processing.RNA decay.exosome complex.associated...	0.02	OrthoFinder output from all 47 species
AMTR_s00066p00125980	evm_27.TU.AmTr_v1...	RNA processing.RNA decay.exosome complex.associated...	0.02	OrthoFinder output from all 47 species
Als_g13022	No alias	RNA helicase component *(MTR4) of TRAMP nucleolar...	0.03	OrthoFinder output from all 47 species
Aob_g12480	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.02	OrthoFinder output from all 47 species
Azfi_s0027.g023708	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.03	OrthoFinder output from all 47 species
Dcu_g18967	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.03	OrthoFinder output from all 47 species
LOC_Os11g07500.1	HEN2, LOC_Os11g07500	RNA helicase component MTR4/HEN2 of Nuclear Exosome...	0.02	OrthoFinder output from all 47 species
Len_g22463	No alias	RNA helicase component *(MTR4) of TRAMP nucleolar...	0.03	OrthoFinder output from all 47 species
Lfl_g38626	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.04	OrthoFinder output from all 47 species
Mp1g05510.1	No alias	RNA helicase component SKI2 of SUPERKILLER (SKI)...	0.01	OrthoFinder output from all 47 species
Nbi_g03153	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.03	OrthoFinder output from all 47 species
Pir_g18687	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.04	OrthoFinder output from all 47 species
Pnu_g07585	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.03	OrthoFinder output from all 47 species
Pnu_g07586	HEN2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g14012	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.03	OrthoFinder output from all 47 species
Spa_g29638	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.03	OrthoFinder output from all 47 species
Tin_g21647	No alias	RNA helicase component *(MTR4) of TRAMP nucleolar...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
CC	GO:0016459	myosin complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012961	Ski2/MTR4_C	818	988
IPR011545	DEAD/DEAH_box_helicase_dom	72	219
IPR001650	Helicase_C	357	461
IPR025696	rRNA_proc-arch_dom	515	791

External Links

No external refs found!

Cba_g07746

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation