Cba_g07200


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g07200

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00062420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g20730... 0.03 OrthoFinder output from all 47 species
Adi_g034009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g087178 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g109057 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g110647 MEF21 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117068 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42379 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16829 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17623 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g18705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene02296.t1 Aspi01Gene02296 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55921.t1 OTP82, Aspi01Gene55921 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene59237.t1 Aspi01Gene59237 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g31685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.12G084700.1 Ceric.12G084700 not classified & original description: pacid=50602071... 0.02 OrthoFinder output from all 47 species
Ceric.18G049100.1 Ceric.18G049100 not classified & original description: pacid=50621467... 0.03 OrthoFinder output from all 47 species
Ceric.20G001900.1 Ceric.20G001900 not classified & original description: pacid=50565969... 0.03 OrthoFinder output from all 47 species
Dac_g35222 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35674 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12105 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16942 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26344 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17807 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g20638 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008922001 No alias Pentatricopeptide repeat-containing protein At4g08210... 0.03 OrthoFinder output from all 47 species
GSVIVT01013023001 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.03 OrthoFinder output from all 47 species
LOC_Os06g27790.1 REME1, LOC_Os06g27790 Pentatricopeptide repeat-containing protein At2g03880,... 0.02 OrthoFinder output from all 47 species
Len_g18520 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06736 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07103 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g08093 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g14946 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g33317 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g37537 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g03763 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g27109 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g29321 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31440 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34483 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g03746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g24053 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g28119 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08807 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g34280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41642 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41731 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g02794 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03488 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22838 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g23568 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30607 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13232 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008151 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015029 No alias not classified & original description: CDS=1-2931 0.03 OrthoFinder output from all 47 species
Sam_g02929 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14278 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g17751 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17989 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19551 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g21956 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24781 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26323 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27568 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36161 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36238 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g38692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g49086 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g49275 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo100621 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Smo105356 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 OrthoFinder output from all 47 species
Smo118230 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Smo34638 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.03 OrthoFinder output from all 47 species
Smo429215 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.02 OrthoFinder output from all 47 species
Smo442088 CRR22 Pentatricopeptide repeat-containing protein At2g33760... 0.02 OrthoFinder output from all 47 species
Smo96927 EMB2758 Pentatricopeptide repeat-containing protein At3g24000,... 0.03 OrthoFinder output from all 47 species
Smo97289 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Tin_g04710 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05186 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g06105 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g31905 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e035817_P001 Zm00001e035817 Pentatricopeptide repeat-containing protein At4g32430,... 0.02 OrthoFinder output from all 47 species
Zm00001e037542_P001 Zm00001e037542 Pentatricopeptide repeat-containing protein At4g16470... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 49 71
IPR002885 Pentatricopeptide_repeat 151 176
IPR002885 Pentatricopeptide_repeat 74 121
IPR002885 Pentatricopeptide_repeat 177 223
No external refs found!