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  5. Cba_g06599

Cba_g06599


Description : component *(TRA1) of SAGA transcription co-activator complex & original description: none


Gene families : OG0002090 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002090_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g06599

Target Alias Description ECC score Gene Family Method Actions
AT2G17930 No alias Phosphatidylinositol 3- and 4-kinase family protein with... 0.04 OrthoFinder output from all 47 species
AT4G36080 No alias phosphotransferases, alcohol group as... 0.05 OrthoFinder output from all 47 species
Adi_g012013 No alias component *(TRA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Aev_g05547 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ala_g11954 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Als_g07336 No alias component *(TRA1) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Als_g20278 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Aop_g10616 No alias component *(TRA1) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Cre02.g088750 No alias Protein modification.phosphorylation.atypical kinase... 0.04 OrthoFinder output from all 47 species
Dde_g21159 No alias component *(TRA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
GSVIVT01018783001 No alias Protein modification.phosphorylation.atypical kinase... 0.04 OrthoFinder output from all 47 species
LOC_Os07g45064.1 LOC_Os07g45064 component TRA1 of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
LOC_Os07g45070.1 LOC_Os07g45070 component TRA1 of SAGA transcription co-activator complex 0.03 OrthoFinder output from all 47 species
LOC_Os07g45074.1 LOC_Os07g45074 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10427352g0010 No alias component TRA1 of SAGA transcription co-activator complex 0.05 OrthoFinder output from all 47 species
MA_10427352g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g38151 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Solyc02g083900.3.1 Solyc02g083900 component TRA1 of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Spa_g25856 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Tin_g32158 No alias component *(TRA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Zm00001e035713_P005 Zm00001e035713 component TRA1 of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR003152 FATC_dom 3854 3883
IPR003151 PIK-rel_kinase_FAT 2809 3148
IPR046807 Tra1_central 251 810
IPR000403 PI3/4_kinase_cat_dom 3551 3797
IPR046805 Tra1_ring 822 2665
No external refs found!