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  5. Cba_g06524

Cba_g06524


Description : substrate(PAL) adaptor of SCF E3 ubiquitin ligase *(SAGL1) & original description: none


Gene families : OG0000469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000469_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g06524

Target Alias Description ECC score Gene Family Method Actions
AT1G55270 No alias Galactose oxidase/kelch repeat superfamily protein 0.03 OrthoFinder output from all 47 species
Aspi01Gene13901.t1 Aspi01Gene13901 substrate(PAL) adaptor of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
LOC_Os10g26990.1 LOC_Os10g26990 phenylpropanoid biosynthesis regulator (SAGL1) 0.03 OrthoFinder output from all 47 species
MA_190236g0010 No alias F-box/kelch-repeat protein At1g67480 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Smo83069 No alias F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Smo92722 SKIP4 F-box/kelch-repeat protein SKIP4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc01g022740.3.1 Solyc01g022740 phenylpropanoid biosynthesis regulator (SAGL1) 0.04 OrthoFinder output from all 47 species
Spa_g16441 SKIP6 substrate adaptor *(SKIP6) of SCF E3 ubiquitin ligase... 0.05 OrthoFinder output from all 47 species
Zm00001e004803_P001 Zm00001e004803 phenylpropanoid biosynthesis regulator (SAGL1) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006652 Kelch_1 212 258
No external refs found!