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  5. Cba_g05962

Cba_g05962


Description : E3 ubiquitin ligase component *(Doa10) of ER-associated protein degradation (ERAD) machinery & original description: none


Gene families : OG0001940 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001940_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g05962

Target Alias Description ECC score Gene Family Method Actions
Aev_g21227 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.02 OrthoFinder output from all 47 species
Als_g08671 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.04 OrthoFinder output from all 47 species
Aob_g08474 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.02 OrthoFinder output from all 47 species
Dcu_g03181 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.03 OrthoFinder output from all 47 species
LOC_Os06g43210.1 LOC_Os06g43210 ubiquitin ligase component Doa10 of ER-associated... 0.02 OrthoFinder output from all 47 species
Lfl_g09550 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.03 OrthoFinder output from all 47 species
Pir_g20401 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0071.g016789 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.02 OrthoFinder output from all 47 species
Spa_g26742 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006206 pyrimidine nucleobase metabolic process IEP HCCA
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009112 nucleobase metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP HCCA
BP GO:0046112 nucleobase biosynthetic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 40 86
No external refs found!