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  5. Cba_g05833

Cba_g05833


Description : not classified & original description: none


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g05833
Cluster HCCA: Cluster_300

Target Alias Description ECC score Gene Family Method Actions
AT1G26800 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G55530 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G10815 No alias RING/U-box superfamily protein 0.06 OrthoFinder output from all 47 species
AT4G26400 No alias RING/U-box superfamily protein 0.17 OrthoFinder output from all 47 species
Adi_g088306 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g04888 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04416 RHC1A not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g03287 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g21770 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g46359 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g08151 RHC1A not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g08256 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g11152 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ehy_g14500 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_12946 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os03g22830.2 RHC1A, LOC_Os03g22830 Probable E3 ubiquitin-protein ligase RHC1A... 0.03 OrthoFinder output from all 47 species
LOC_Os11g02670.1 LOC_Os11g02670 E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.04 OrthoFinder output from all 47 species
MA_9328282g0010 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g10979 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ore_g23014 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Pnu_g16883 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g06799 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Sam_g25212 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Zm00001e011788_P002 Zm00001e011788 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 169 211
IPR039525 RNF126-like_zinc-ribbon 11 41
No external refs found!