Cba_g05828 (RH8, ATRH8)

Aliases : RH8, ATRH8

Description : DDX6-type mRNA helicase *(RH12/RH8) & original description: none

Gene families : OG0001822 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001822_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g05828

Target	Alias	Description	ECC score	Gene Family Method
AT3G61240	No alias	DEA(D/H)-box RNA helicase family protein	0.02	OrthoFinder output from all 47 species
AT4G00660	RH8, ATRH8	RNAhelicase-like 8	0.02	OrthoFinder output from all 47 species
Dac_g00777	RH8, ATRH8	DDX6-type mRNA helicase *(RH12/RH8) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g02256	RH8, ATRH8	DDX6-type mRNA helicase *(RH12/RH8) & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os02g42860.1	RH8, ATRH8,...	DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Nbi_g10959	RH8, ATRH8	DDX6-type mRNA helicase *(RH12/RH8) & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c11_17170V3.1	RH8, ATRH8, Pp3c11_17170	RNAhelicase-like 8	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g008978	RH8, ATRH8	DDX6-type mRNA helicase *(RH12/RH8) & original...	0.03	OrthoFinder output from all 47 species
Sam_g18112	No alias	DDX6-type mRNA helicase *(RH12/RH8) & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g02032	RH8, ATRH8	DDX6-type mRNA helicase *(RH12/RH8) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e004416_P001	RH8, ATRH8,...	DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	93	256
IPR001650	Helicase_C	294	400

External Links

No external refs found!