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  5. Cba_g05727

Cba_g05727


Description : GARP subgroup PHL transcription factor & original description: none


Gene families : OG0000036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g05727

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00095620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
Adi_g057577 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Als_g22007 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Als_g39874 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31112.t1 Aspi01Gene31112 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g09042 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Cba_g11944 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g20180 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dde_g26213 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ehy_g06852 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
LOC_Os08g25799.1 LOC_Os08g25799 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Len_g03175 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Lfl_g27534 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Lfl_g32204 KAN2 KANADI-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
MA_636769g0010 PHL1 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Mp3g04970.1 KAN, KAN1 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Ore_g03482 KAN4, ATS KANADI-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19411 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Pir_g39083 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014434 No alias not classified & original description: CDS=36-716 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015782 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Solyc11g022470.2.1 Solyc11g022470 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Spa_g04247 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Spa_g22319 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Spa_g29568 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR025756 Myb_CC_LHEQLE 143 189
IPR001005 SANT/Myb 49 99
No external refs found!