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  5. Cba_g05343

Cba_g05343


Description : component *(RINGLET/RLT) of ISWI chromatin remodeling complex & original description: none


Gene families : OG0001590 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001590_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g05343

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00137050 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
AMTR_s00092p00109950 evm_27.TU.AmTr_v1... Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT5G44180 No alias Homeodomain-like transcriptional regulator 0.03 OrthoFinder output from all 47 species
Adi_g081134 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g098478 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g02721 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Als_g14029 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Ceric.16G048200.1 HB-1, Ceric.16G048200 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Ceric.38G016400.1 Ceric.38G016400 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.04 OrthoFinder output from all 47 species
GSVIVT01020605001 No alias RNA biosynthesis.transcriptional activation.HB... 0.05 OrthoFinder output from all 47 species
GSVIVT01021113001 HB-1 RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
GSVIVT01036776001 No alias Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os05g48820.1 LOC_Os05g48820 HOX-like transcription factor 0.03 OrthoFinder output from all 47 species
LOC_Os07g42750.1 LOC_Os07g42750 Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Lfl_g05044 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.03 OrthoFinder output from all 47 species
MA_2434g0010 No alias HOX-like transcription factor 0.03 OrthoFinder output from all 47 species
Msp_g47810 HB-1 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ore_g29882 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Pir_g08329 HB-1 component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Pnu_g17316 No alias component *(RINGLET/RLT) of ISWI chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Sam_g29222 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g077660.3.1 HB-1, Solyc02g077660 HOX-like transcription factor 0.05 OrthoFinder output from all 47 species
Zm00001e006057_P001 Zm00001e006057 Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e020198_P001 HB-1, Zm00001e020198 HOX-like transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e028032_P001 Zm00001e028032 HOX-like transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR028942 WHIM1_dom 1008 1049
IPR007759 Asxl_HARE-HTH 794 860
IPR028941 WHIM2_dom 1173 1245
IPR001356 Homeobox_dom 15 70
IPR018501 DDT_dom 607 660
No external refs found!