Cba_g05272


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g05272

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00170p00032020 OTP86,... Pentatricopeptide repeat-containing protein At5g16860... 0.06 OrthoFinder output from all 47 species
AT3G13880 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G25060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g018868 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g026470 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g13795 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g18040 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g27991 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g12481 OTP82 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g35854 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g22581 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g02534 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g03430 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g16780 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g23947 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g38090 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene02331.t1 Aspi01Gene02331 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene11318.t1 CRR22, Aspi01Gene11318 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75238 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g78225 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.06G074600.1 Ceric.06G074600 not classified & original description: pacid=50619733... 0.07 OrthoFinder output from all 47 species
Ceric.09G066700.1 Ceric.09G066700 not classified & original description: pacid=50588343... 0.04 OrthoFinder output from all 47 species
Ceric.22G073800.1 Ceric.22G073800 not classified & original description: pacid=50614043... 0.05 OrthoFinder output from all 47 species
Ceric.28G027300.1 CRR22, Ceric.28G027300 not classified & original description: pacid=50569783... 0.08 OrthoFinder output from all 47 species
Dac_g05194 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g28641 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
GSVIVT01003766001 LPA66 Pentatricopeptide repeat-containing protein At1g08070,... 0.03 OrthoFinder output from all 47 species
Len_g30844 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g50232 EMB2758 not classified & original description: none 0.06 OrthoFinder output from all 47 species
MA_114565g0020 OTP84 Pentatricopeptide repeat-containing protein At5g16860... 0.03 OrthoFinder output from all 47 species
MA_16917g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_230261g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
MA_77675g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
MA_794605g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_96662g0010 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Msp_g31739 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g21358 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g21989 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g32589 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g02088 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25436 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g26038 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g19344 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g03353 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g30107 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014790 No alias not classified & original description: CDS=1-2049 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018685 No alias not classified & original description: CDS=1-1332 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0110.g020618 REME1 not classified & original description: CDS=24-1478 0.02 OrthoFinder output from all 47 species
Sam_g16549 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06389 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 341 385
IPR002885 Pentatricopeptide_repeat 540 586
IPR002885 Pentatricopeptide_repeat 140 187
IPR002885 Pentatricopeptide_repeat 439 486
IPR002885 Pentatricopeptide_repeat 239 285
IPR002885 Pentatricopeptide_repeat 413 437
IPR002885 Pentatricopeptide_repeat 213 234
IPR002885 Pentatricopeptide_repeat 514 539
No external refs found!