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  5. Cba_g05258

Cba_g05258


Description : not classified & original description: none


Gene families : OG0011810 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0011810_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g05258
Cluster HCCA: Cluster_293

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0040.g026627 No alias not classified & original description: CDS=1-1722 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 100 148
IPR002885 Pentatricopeptide_repeat 335 384
IPR002885 Pentatricopeptide_repeat 235 282
IPR002885 Pentatricopeptide_repeat 203 229
IPR002885 Pentatricopeptide_repeat 175 197
IPR002885 Pentatricopeptide_repeat 410 435
IPR002885 Pentatricopeptide_repeat 310 334
IPR046848 E_motif 454 494
No external refs found!