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  5. Cba_g05253

Cba_g05253


Description : E3 ubiquitin ligase *(RMA/MUSE) & original description: none


Gene families : OG0000266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000266_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g05253

Target Alias Description ECC score Gene Family Method Actions
Adi_g110749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04737 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene22843.t1 Aspi01Gene22843 E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os08g06510.1 LOC_Os08g06510 RING-HC-class E3 ligase 0.04 OrthoFinder output from all 47 species
Solyc07g063200.3.1 RMA3, ATRMA3,... RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc10g008400.1.1 RMA1, ATRMA1,... RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e005157_P001 Zm00001e005157 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e026195_P001 Zm00001e026195 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 497 537
No external refs found!