1. Home
  2. Species
  3. Lygodium flexuosum
  4. Sequence
  5. Lfl_g31196

Lfl_g31196


Description : E3 ubiquitin ligase *(RIE1) & original description: none


Gene families : OG0001080 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001080_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g31196

Target Alias Description ECC score Gene Family Method Actions
AT1G12760 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.02 OrthoFinder output from all 47 species
Aspi01Gene18595.t1 Aspi01Gene18595 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.16G053500.1 Ceric.16G053500 E3 ubiquitin ligase *(RIE1) & original description:... 0.02 OrthoFinder output from all 47 species
Dde_g03387 No alias E3 ubiquitin ligase *(RIE1) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01019826001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
Mp2g06960.1 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011049 No alias not classified & original description: CDS=158-757 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014616 No alias E3 ubiquitin ligase *(RIE1) & original description: CDS=8-1258 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0188.g025154 No alias E3 ubiquitin ligase *(RIE1) & original description: CDS=62-1252 0.02 OrthoFinder output from all 47 species
Sam_g50584 No alias E3 ubiquitin ligase *(RIE1) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50585 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g051040.4.1 Solyc05g051040 RING-H2-class E3 ligase 0.07 OrthoFinder output from all 47 species
Zm00001e007222_P001 Zm00001e007222 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 335 377
No external refs found!