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  5. Cba_g05132

Cba_g05132


Description : E3 ubiquitin ligase *(RGLG) & original description: none


Gene families : OG0000455 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000455_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g05132
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AT1G67800 No alias Copine (Calcium-dependent phospholipid-binding protein) family 0.02 OrthoFinder output from all 47 species
AT3G01650 RGLG1 RING domain ligase1 0.02 OrthoFinder output from all 47 species
Aev_g33551 RGLG2 E3 ubiquitin ligase *(RGLG) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g13446 No alias E3 ubiquitin ligase *(RGLG) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene26782.t1 RGLG1, Aspi01Gene26782 E3 ubiquitin ligase *(RGLG) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34651 RGLG1 E3 ubiquitin ligase *(RGLG) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G023900.1 Ceric.06G023900 E3 ubiquitin ligase *(RGLG) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.06G037200.1 RGLG2, Ceric.06G037200 E3 ubiquitin ligase *(RGLG) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.1Z003900.1 RGLG1, Ceric.1Z003900 E3 ubiquitin ligase *(RGLG) & original description:... 0.03 OrthoFinder output from all 47 species
Lfl_g13675 No alias E3 ubiquitin ligase *(RGLG) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g25617 No alias E3 ubiquitin ligase *(RGLG) & original description: none 0.03 OrthoFinder output from all 47 species
MA_462034g0010 No alias E3 ubiquitin-protein ligase RGLG4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_8953546g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Nbi_g32618 No alias E3 ubiquitin ligase *(RGLG) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06814 RGLG1 E3 ubiquitin ligase *(RGLG) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g51392 RGLG2 E3 ubiquitin ligase *(RGLG) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g52235 No alias E3 ubiquitin ligase *(RGLG) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53579 No alias E3 ubiquitin ligase *(RGLG) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g55605 No alias E3 ubiquitin ligase *(RGLG) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g56861 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e030550_P001 RGLG2, Zm00001e030550 RING-HC-class E3 ligase. ligating E3 protein (RGLG) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
InterPro domains Description Start Stop
IPR010734 Copine_C 53 267
No external refs found!