Cba_g04896


Description : LIM-type transcription factor & original description: none


Gene families : OG0000440 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000440_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g04896

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00259550 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.LIM... 0.02 OrthoFinder output from all 47 species
AT3G61230 No alias GATA type zinc finger transcription factor family protein 0.02 OrthoFinder output from all 47 species
Adi_g098070 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g19801 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07996 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27190 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07606 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g18839 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g65927 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.07G010100.1 Ceric.07G010100 LIM-type transcription factor & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.09G007700.1 WLIM1, Ceric.09G007700 LIM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dde_g04716 WLIM1 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g15259 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009338001 WLIM1 RNA biosynthesis.transcriptional activation.LIM... 0.02 OrthoFinder output from all 47 species
GSVIVT01019807001 No alias RNA biosynthesis.transcriptional activation.LIM... 0.02 OrthoFinder output from all 47 species
LOC_Os02g42820.1 LOC_Os02g42820 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
LOC_Os04g45010.1 LOC_Os04g45010 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
LOC_Os06g13030.1 WLIM1, LOC_Os06g13030 transcription factor (LIM) 0.01 OrthoFinder output from all 47 species
Len_g14961 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g00234 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25943 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16596 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc10g017520.3.1 Solyc10g017520 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
Solyc12g088320.2.1 WLIM1, Solyc12g088320 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
Spa_g01071 No alias LIM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g22148 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g22855 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g53439 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04312 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015234_P001 Zm00001e015234 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
Zm00001e018310_P001 WLIM1, Zm00001e018310 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Zm00001e023098_P001 Zm00001e023098 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR001781 Znf_LIM 10 65
IPR001781 Znf_LIM 107 162
No external refs found!