Cba_g04735

Description : not classified & original description: none

Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g04735

Target	Alias	Description	ECC score	Gene Family Method
AT5G13010	EMB3011	RNA helicase family protein	0.02	OrthoFinder output from all 47 species
Adi_g078789	No alias	RNA helicase *(Prp22) & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g30923	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g06989	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Mp4g16380.1	ESP3, EMB2733	RNA helicase (Prp2)	0.01	OrthoFinder output from all 47 species
Mp7g03460.1	EMB3011	RNA helicase (Prp16)	0.01	OrthoFinder output from all 47 species
Sam_g29503	No alias	RNA helicase *(Prp22) & original description: none	0.04	OrthoFinder output from all 47 species
Solyc01g079250.3.1	Solyc01g079250	helicase Prp43 of Intron-Lariat Spliceosome complex	0.03	OrthoFinder output from all 47 species
Spa_g12231	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0031072	heat shock protein binding	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	774	904
IPR003029	S1_domain	278	345
IPR011709	DEAD-box_helicase_OB_fold	1112	1187
IPR007502	Helicase-assoc_dom	966	1054
IPR011545	DEAD/DEAH_box_helicase_dom	581	730

External Links

No external refs found!