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  5. Cba_g04670

Cba_g04670


Description : mitochondrial RNA splicing factor *(ABO5) & original description: none


Gene families : OG0005617 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005617_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g04670

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00191420 ABO5,... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
Ala_g20164 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.03 OrthoFinder output from all 47 species
Als_g56987 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g11869 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.04 OrthoFinder output from all 47 species
Dde_g06863 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g12116 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.04 OrthoFinder output from all 47 species
Lfl_g34233 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10433402g0010 ABO5 ABO5 mitochondrial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Ppi_g49410 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10630 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 514 539
IPR002885 Pentatricopeptide_repeat 615 643
IPR033443 PPR_long 319 465
IPR002885 Pentatricopeptide_repeat 268 313
IPR002885 Pentatricopeptide_repeat 544 591
IPR002885 Pentatricopeptide_repeat 647 695
No external refs found!