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  5. Cba_g04093

Cba_g04093


Description : component *(SF3B3) of splicing factor 3B complex & original description: none


Gene families : OG0007395 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007395_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g04093

Target Alias Description ECC score Gene Family Method Actions
AT3G55220 No alias Cleavage and polyadenylation specificity factor (CPSF) A... 0.03 OrthoFinder output from all 47 species
Ala_g02677 No alias component *(SF3B3) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Als_g03253 No alias component *(SF3B3) of splicing factor 3B complex &... 0.06 OrthoFinder output from all 47 species
Aop_g07573 No alias component *(SF3B3) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Ceric.26G015800.1 Ceric.26G015800 component *(SF3B3) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001024.5 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Cre08.g372800 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Dcu_g03168 No alias component *(SF3B3) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Mp7g13330.1 No alias component SF3B3 of splicing factor 3B complex 0.02 OrthoFinder output from all 47 species
Ppi_g04707 No alias component *(SF3B3) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g015973 No alias component *(SF3B3) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Sam_g07166 No alias component *(SF3B3) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Smo171237 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Solyc04g010260.3.1 Solyc04g010260 component SF3B3 of splicing factor 3B complex 0.02 OrthoFinder output from all 47 species
Tin_g06130 No alias component *(SF3B3) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e013611_P001 Zm00001e013611 component SF3B3 of splicing factor 3B complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 851 1170
IPR018846 Cleavage/polyA-sp_fac_asu_N 75 589
No external refs found!