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  5. Cba_g03987

Cba_g03987 (PTAC16)


Aliases : PTAC16

Description : cofactor of plastid-encoded RNA polymerase *(TAC16) & original description: none


Gene families : OG0007234 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007234_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g03987

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00257120 PTAC16,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.08 OrthoFinder output from all 47 species
AT3G46780 PTAC16 plastid transcriptionally active 16 0.14 OrthoFinder output from all 47 species
Adi_g011791 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.04 OrthoFinder output from all 47 species
Aev_g02347 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.07 OrthoFinder output from all 47 species
Ala_g09140 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.08 OrthoFinder output from all 47 species
Als_g03152 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.09 OrthoFinder output from all 47 species
Aob_g18050 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.11 OrthoFinder output from all 47 species
Aop_g68943 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.11 OrthoFinder output from all 47 species
Aspi01Gene18545.t1 PTAC16, Aspi01Gene18545 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.05 OrthoFinder output from all 47 species
Azfi_s0072.g036982 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.06 OrthoFinder output from all 47 species
Ceric.19G051100.1 PTAC16, Ceric.19G051100 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.12 OrthoFinder output from all 47 species
Cre02.g081250 No alias No description available 0.03 OrthoFinder output from all 47 species
Dac_g08836 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.07 OrthoFinder output from all 47 species
Dcu_g01601 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.04 OrthoFinder output from all 47 species
Dde_g25352 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.07 OrthoFinder output from all 47 species
Ehy_g03814 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.04 OrthoFinder output from all 47 species
GSVIVT01024905001 PTAC16 RNA biosynthesis.organelle machineries.RNA polymerase... 0.07 OrthoFinder output from all 47 species
Gb_02666 PTAC16 TAC16 cofactor of plastid-encoded RNA polymerase 0.05 OrthoFinder output from all 47 species
LOC_Os05g22614.1 PTAC16, LOC_Os05g22614 TAC16 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
Len_g15964 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.13 OrthoFinder output from all 47 species
Lfl_g39154 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.08 OrthoFinder output from all 47 species
MA_806g0020 PTAC16 TAC16 cofactor of plastid-encoded RNA polymerase 0.06 OrthoFinder output from all 47 species
Mp8g16460.1 PTAC16 TAC16 cofactor of plastid-encoded RNA polymerase 0.1 OrthoFinder output from all 47 species
Msp_g05519 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.04 OrthoFinder output from all 47 species
Nbi_g10293 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.06 OrthoFinder output from all 47 species
Ore_g05533 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.09 OrthoFinder output from all 47 species
Ore_g05534 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.06 OrthoFinder output from all 47 species
Pir_g07718 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.09 OrthoFinder output from all 47 species
Pnu_g17360 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014956 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.04 OrthoFinder output from all 47 species
Solyc06g005710.3.1 PTAC16, Solyc06g005710 TAC16 cofactor of plastid-encoded RNA polymerase 0.09 OrthoFinder output from all 47 species
Spa_g56471 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.03 OrthoFinder output from all 47 species
Tin_g08369 PTAC16 cofactor of plastid-encoded RNA polymerase *(TAC16) &... 0.1 OrthoFinder output from all 47 species
Zm00001e026770_P002 PTAC16, Zm00001e026770 TAC16 cofactor of plastid-encoded RNA polymerase 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR016040 NAD(P)-bd_dom 162 373
No external refs found!