Cba_g03970 (BUM1, SHL, STM, WAM, WAM1, BUM)

Aliases : BUM1, SHL, STM, WAM, WAM1, BUM

Description : KNOX-type transcription factor & original description: none

Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g03970

Target	Alias	Description	ECC score	Gene Family Method
AT1G70510	KNAT2, ATK1	KNOTTED-like from Arabidopsis thaliana 2	0.03	OrthoFinder output from all 47 species
Ala_g21136	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g17223	KNAT3	KNOX-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
LOC_Os03g47016.1	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
MA_3582g0010	KNAT3	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
Ore_g17670	KNAT4	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c18_18750V3.1	Pp3c18_18750	KNOTTED1-like homeobox gene 6	0.01	OrthoFinder output from all 47 species
Pp3c19_5610V3.1	Pp3c19_5610	No annotation	0.01	OrthoFinder output from all 47 species
Pp3c21_10320V3.1	BUM1, SHL, STM,...	KNOTTED-like from Arabidopsis thaliana 2	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0091.g018782	KNAT2, ATK1	not classified & original description: CDS=1-1071	0.03	OrthoFinder output from all 47 species
Smo415291	BUM1, SHL, STM,...	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
Zm00001e027562_P001	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR008422	Homeobox_KN_domain	366	405
IPR005539	ELK_dom	327	347
IPR005540	KNOX1	176	215
IPR005541	KNOX2	227	272

External Links

No external refs found!