Cba_g02095

Description : exoribonuclease *(RRP6L) & original description: none

Gene families : OG0002027 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002027_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g02095

Target	Alias	Description	ECC score	Gene Family Method
AT2G32415	No alias	Polynucleotidyl transferase, ribonuclease H fold protein...	0.02	OrthoFinder output from all 47 species
AT5G35910	No alias	Polynucleotidyl transferase, ribonuclease H fold protein...	0.03	OrthoFinder output from all 47 species
Adi_g023610	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.03G064000.1	Ceric.03G064000	exoribonuclease *(RRP6L) & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.03G064200.1	Ceric.03G064200	not classified & original description: pacid=50572735...	0.03	OrthoFinder output from all 47 species
Ceric.19G014700.1	Ceric.19G014700	exoribonuclease *(RRP6L) & original description:...	0.03	OrthoFinder output from all 47 species
LOC_Os07g32890.1	LOC_Os07g32890	exoribonuclease (RRP6L)	0.02	OrthoFinder output from all 47 species
Len_g17361	No alias	exoribonuclease *(RRP6L) & original description: none	0.03	OrthoFinder output from all 47 species
MA_21677g0010	No alias	Protein RRP6-like 2 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Ore_g37433	No alias	exoribonuclease *(RRP6L) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc10g018520.1.1	Solyc10g018520	exoribonuclease (RRP6L)	0.02	OrthoFinder output from all 47 species
Spa_g12919	No alias	exoribonuclease *(RRP6L) & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000176	nuclear exosome (RNase complex)	IEA	Interproscan
CC	GO:0000178	exosome (RNase complex)	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1905354	exoribonuclease complex	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002121	HRDC_dom	467	533
IPR002562	3'-5'_exonuclease_dom	250	415
IPR012588	Exosome-assoc_fac_Rrp6_N	34	114

External Links

No external refs found!