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  5. Cba_g01876

Cba_g01876 (LZF1, STH3, DBB3)


Aliases : LZF1, STH3, DBB3

Description : BBX class-IV transcription factor & original description: none


Gene families : OG0000403 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000403_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g01876

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00182p00043350 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AT1G78600 LZF1, STH3, DBB3 light-regulated zinc finger protein 1 0.05 OrthoFinder output from all 47 species
Adi_g080080 No alias BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g04775 No alias BBX class-IV transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g19677 No alias BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14676 STO BBX class-IV transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g28425 No alias BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g008055 LZF1, STH3, DBB3 BBX class-IV transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dac_g08426 STH BBX class-IV transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01024173001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
LOC_Os02g39360.1 STH, LOC_Os02g39360 transcription factor (BBX-DBB) 0.02 OrthoFinder output from all 47 species
Len_g31145 STH BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g21663 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g10682 STO BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19854 LZF1, STH3, DBB3 BBX class-IV transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g11699 No alias BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16992 STO BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31497 No alias BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0138.g022562 LZF1, STH3, DBB3 BBX class-IV transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0212.g025956 LZF1, STH3, DBB3 BBX class-IV transcription factor & original... 0.03 OrthoFinder output from all 47 species
Smo111647 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
Solyc01g110180.4.1 Solyc01g110180 transcription factor (BBX-DBB) 0.02 OrthoFinder output from all 47 species
Solyc12g005420.2.1 LZF1, STH3,... transcription factor (BBX-DBB) 0.03 OrthoFinder output from all 47 species
Spa_g39275 No alias BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56814 No alias BBX class-IV transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e007720_P001 STO, Zm00001e007720 transcription factor (BBX-DBB) 0.02 OrthoFinder output from all 47 species
Zm00001e034791_P001 Zm00001e034791 transcription factor (BBX-DBB) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003714 transcription corepressor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006450 regulation of translational fidelity IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
MF GO:0015098 molybdate ion transmembrane transporter activity IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
BP GO:0015689 molybdate ion transport IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0030955 potassium ion binding IEP HCCA
MF GO:0031420 alkali metal ion binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 4 47
IPR000315 Znf_B-box 54 96
No external refs found!