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  5. Cba_g01842

Cba_g01842 (RGP3, RGP)


Aliases : RGP3, RGP

Description : UDP-L-arabinose mutase & original description: none


Gene families : OG0001238 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001238_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g01842

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00020p00173350 evm_27.TU.AmTr_v1... Carbohydrate metabolism.nucleotide sugar... 0.02 OrthoFinder output from all 47 species
Adi_g082268 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g40610 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g06621 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g12775 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31603 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02782 RGP3, RGP UDP-L-arabinose mutase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04276 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0110.g045465 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: CDS=87-1109 0.02 OrthoFinder output from all 47 species
Ceric.02G101600.1 ATRGP1, RGP1,... UDP-L-arabinose mutase & original description:... 0.02 OrthoFinder output from all 47 species
Ehy_g07553 RGP3, RGP UDP-L-arabinose mutase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008133001 RGP3, RGP Carbohydrate metabolism.nucleotide sugar... 0.03 OrthoFinder output from all 47 species
LOC_Os03g40270.1 RGP2, ATRGP2,... UDP-L-arabinose mutase 0.02 OrthoFinder output from all 47 species
LOC_Os04g56520.2 LOC_Os04g56520 UDP-L-arabinose mutase 0.04 OrthoFinder output from all 47 species
LOC_Os07g41360.1 ATRGP1, RGP1,... UDP-L-arabinose mutase 0.03 OrthoFinder output from all 47 species
Lfl_g05869 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: none 0.03 OrthoFinder output from all 47 species
MA_18309g0010 No alias UDP-L-arabinose mutase 0.02 OrthoFinder output from all 47 species
Mp2g10790.1 RGP3, RGP UDP-L-arabinose mutase 0.02 OrthoFinder output from all 47 species
Mp2g10800.1 ATRGP1, RGP1 UDP-L-arabinose mutase 0.04 OrthoFinder output from all 47 species
Msp_g11270 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g01554 RGP3, RGP UDP-L-arabinose mutase & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g09389 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g05889 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15549 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0201.g025620 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: CDS=1-876 0.02 OrthoFinder output from all 47 species
Solyc02g089170.4.1 ATRGP1, RGP1,... UDP-L-arabinose mutase 0.02 OrthoFinder output from all 47 species
Solyc03g019750.3.1 RGP3, RGP, Solyc03g019750 UDP-L-arabinose mutase 0.02 OrthoFinder output from all 47 species
Solyc03g070390.3.1 ATRGP1, RGP1,... UDP-L-arabinose mutase 0.02 OrthoFinder output from all 47 species
Solyc04g005340.2.1 ATRGP1, RGP1,... UDP-L-arabinose mutase 0.06 OrthoFinder output from all 47 species
Tin_g40978 RGP3, RGP UDP-L-arabinose mutase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006668_P001 Zm00001e006668 UDP-L-arabinose mutase 0.04 OrthoFinder output from all 47 species
Zm00001e012459_P003 RGP2, ATRGP2,... UDP-L-arabinose mutase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR037595 RGP_fam 4 337
No external refs found!