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  5. Cba_g01318

Cba_g01318


Description : not classified & original description: none


Gene families : OG0004397 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004397_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g01318

Target Alias Description ECC score Gene Family Method Actions
Als_g01956 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g14198 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G030500.1 PAB1, Ceric.03G030500 not classified & original description: pacid=50572066... 0.03 OrthoFinder output from all 47 species
Dcu_g10701 ATRBP47C, RBP47C not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17086 PAB2, PABP2, ATPAB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25987 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_17348 PAB6 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Len_g11847 PAB1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g11431 PAB2, PABP2, ATPAB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_91352g0010 ATRBP45C no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g44267 ATRBP47C', RBP47C' not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g59407 PAB1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12369 ATRBP47C', RBP47C' not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30621 ATRBP47C', RBP47C' not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g12466 GR-RBP4, GRP4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13976 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g22903 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29710 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12301 PAB1 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
MF GO:0001671 ATPase activator activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 338 396
IPR000504 RRM_dom 239 308
No external refs found!