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  5. Cba_g01242

Cba_g01242


Description : not classified & original description: none


Gene families : OG0001250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001250_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g01242

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00037p00138240 EMB1025,... Pentatricopeptide repeat-containing protein At4g20090... 0.04 OrthoFinder output from all 47 species
AMTR_s00221p00020810 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16420,... 0.02 OrthoFinder output from all 47 species
AT1G55890 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G74580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G80150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G17525 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT2G18520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G13150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g060042 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0177.g056145 No alias not classified & original description: CDS=1-1962 0.03 OrthoFinder output from all 47 species
Ceric.22G014000.1 Ceric.22G014000 not classified & original description: pacid=50615208... 0.03 OrthoFinder output from all 47 species
GSVIVT01011280001 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.03 OrthoFinder output from all 47 species
GSVIVT01027435001 No alias Pentatricopeptide repeat-containing protein At1g05600... 0.03 OrthoFinder output from all 47 species
Gb_23263 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.04 OrthoFinder output from all 47 species
LOC_Os05g04160.1 LOC_Os05g04160 Pentatricopeptide repeat-containing protein At3g48810... 0.03 OrthoFinder output from all 47 species
LOC_Os06g30420.1 EMB1025, LOC_Os06g30420 Pentatricopeptide repeat-containing protein At4g20090... 0.02 OrthoFinder output from all 47 species
LOC_Os08g39050.1 LOC_Os08g39050 Pentatricopeptide repeat-containing protein At1g80150,... 0.03 OrthoFinder output from all 47 species
MA_125741g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.02 OrthoFinder output from all 47 species
MA_17644g0010 No alias Pentatricopeptide repeat-containing protein At2g17525,... 0.02 OrthoFinder output from all 47 species
MA_525159g0010 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.03 OrthoFinder output from all 47 species
MA_57592g0010 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.02 OrthoFinder output from all 47 species
MA_71816g0020 No alias Pentatricopeptide repeat-containing protein At3g14580,... 0.03 OrthoFinder output from all 47 species
MA_742945g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.03 OrthoFinder output from all 47 species
MA_80720g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g012950 No alias not classified & original description: CDS=1-1968 0.02 OrthoFinder output from all 47 species
Solyc07g045380.3.1 Solyc07g045380 Pentatricopeptide repeat-containing protein At1g05600... 0.03 OrthoFinder output from all 47 species
Zm00001e015190_P001 Zm00001e015190 Pentatricopeptide repeat-containing protein At2g18520,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 558 587
IPR002885 Pentatricopeptide_repeat 245 270
IPR002885 Pentatricopeptide_repeat 272 302
IPR002885 Pentatricopeptide_repeat 309 357
IPR002885 Pentatricopeptide_repeat 379 425
IPR002885 Pentatricopeptide_repeat 484 533
IPR002885 Pentatricopeptide_repeat 173 219
No external refs found!