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  5. Sam_g52447

Sam_g52447


Description : mRNA stability factor *(CRP1) & original description: none


Gene families : OG0007882 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007882_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g52447

Target Alias Description ECC score Gene Family Method Actions
Ala_g22401 No alias mRNA stability factor *(CRP1) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g10781 No alias mRNA stability factor *(CRP1) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g13834 No alias mRNA stability factor *(CRP1) & original description: none 0.02 OrthoFinder output from all 47 species
Mp5g09810.1 No alias plastidial mRNA processing factor (CRP1) 0.05 OrthoFinder output from all 47 species
Pir_g10878 No alias mRNA stability factor *(CRP1) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g012014 No alias mRNA stability factor *(CRP1) & original description: CDS=1-1512 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014172 No alias not classified & original description: CDS=1-2166 0.02 OrthoFinder output from all 47 species
Solyc08g045850.3.1 Solyc08g045850 plastidial mRNA processing factor (CRP1) 0.02 OrthoFinder output from all 47 species
Spa_g22309 No alias mRNA stability factor *(CRP1) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 502 549
IPR002885 Pentatricopeptide_repeat 570 600
IPR033443 PPR_long 260 414
IPR002885 Pentatricopeptide_repeat 422 477
IPR002885 Pentatricopeptide_repeat 630 687
No external refs found!