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  5. Sam_g52440

Sam_g52440


Description : ARID-type transcription factor & original description: none


Gene families : OG0002366 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002366_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g52440

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00128600 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.ARID... 0.03 OrthoFinder output from all 47 species
AT2G17410 No alias ARID/BRIGHT DNA-binding domain-containing protein 0.03 OrthoFinder output from all 47 species
Aop_g14261 No alias ARID-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g14994 No alias ARID-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09897 No alias ARID-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os06g41730.1 LOC_Os06g41730 transcription factor (ARID) 0.03 OrthoFinder output from all 47 species
Len_g44864 No alias ARID-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Mp8g07310.1 No alias transcription factor (ARID) 0.02 OrthoFinder output from all 47 species
Pir_g11306 No alias ARID-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53015 No alias ARID-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g082820.4.1 Solyc04g082820 transcription factor (ARID) 0.02 OrthoFinder output from all 47 species
Zm00001e037576_P002 Zm00001e037576 transcription factor (ARID) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002068 A-crystallin/Hsp20_dom 453 530
IPR001606 ARID_dom 184 264
No external refs found!