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  5. Sam_g52287

Sam_g52287


Description : not classified & original description: none


Gene families : OG0002523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g52287

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00138080 EMB16, EMB2036,... Ankyrin repeat domain-containing protein, chloroplastic... 0.05 OrthoFinder output from all 47 species
AT5G40160 EMB139, EMB506 Ankyrin repeat family protein 0.03 OrthoFinder output from all 47 species
Als_g07552 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene06535.t2 Aspi01Gene06535 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0118.g046603 No alias not classified & original description: CDS=1-246 0.03 OrthoFinder output from all 47 species
Ceric.02G110600.1 Ceric.02G110600 not classified & original description: pacid=50584977... 0.06 OrthoFinder output from all 47 species
Ceric.13G040200.1 EMB16, EMB2036,... not classified & original description: pacid=50636798... 0.02 OrthoFinder output from all 47 species
Ceric.14G014700.1 Ceric.14G014700 not classified & original description: pacid=50633928... 0.05 OrthoFinder output from all 47 species
Dac_g36507 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24387 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02482 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01005198001 EMB16, EMB2036, AKRP Ankyrin repeat domain-containing protein, chloroplastic... 0.03 OrthoFinder output from all 47 species
LOC_Os03g04300.3 EMB16, EMB2036,... Ankyrin repeat domain-containing protein, chloroplastic... 0.04 OrthoFinder output from all 47 species
LOC_Os06g13000.1 EMB139, EMB506,... Ankyrin repeat domain-containing protein EMB506,... 0.04 OrthoFinder output from all 47 species
Len_g59009 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g11402 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g18533 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp4g14600.1 No alias Ankyrin repeat domain-containing protein, chloroplastic... 0.04 OrthoFinder output from all 47 species
Nbi_g00869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g38840 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04583 EMB139, EMB506 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g33242 EMB16, EMB2036, AKRP not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02036 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16350 EMB139, EMB506 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g41339 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010764 No alias not classified & original description: CDS=422-1504 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011451 No alias not classified & original description: CDS=16-1155 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012861 No alias not classified & original description: CDS=270-1178 0.03 OrthoFinder output from all 47 species
Sam_g51353 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g061820.4.1 EMB16, EMB2036,... Ankyrin repeat domain-containing protein, chloroplastic... 0.03 OrthoFinder output from all 47 species
Spa_g15917 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g47848 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e025292_P002 EMB139, EMB506,... Ankyrin repeat domain-containing protein EMB506,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002110 Ankyrin_rpt 173 254
No external refs found!