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  5. Sam_g52140

Sam_g52140


Description : regulatory E3 ubiquitin ligase (APD) involved in gametogenesis & original description: none


Gene families : OG0001688 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001688_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g52140
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
Lfl_g01812 No alias regulatory E3 ubiquitin ligase (APD) involved in... 0.02 OrthoFinder output from all 47 species
Mp5g20620.1 ZCF61, DAL2 no description available(sp|q6dbh0|apd2_arath : 134.0) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
InterPro domains Description Start Stop
IPR032010 APD1-4_M 200 316
IPR032008 APD1-4_N 108 174
No external refs found!