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  5. Sam_g51855

Sam_g51855


Description : histone demethylase *(KDM3) & original description: none


Gene families : OG0000328 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000328_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g51855
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00271780 B160,... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00021p00232350 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 OrthoFinder output from all 47 species
AMTR_s00029p00058110 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 OrthoFinder output from all 47 species
AMTR_s00029p00058780 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.04 OrthoFinder output from all 47 species
Adi_g007698 No alias auxiliary component *(JMJ24) of COMPASS histone... 0.04 OrthoFinder output from all 47 species
Adi_g009709 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g010141 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g020057 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g035475 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g059802 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g086369 No alias histone demethylase *(KDM3) & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g109477 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g113340 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g17454 No alias histone demethylase *(KDM3) & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g17890 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g08108 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g11073 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11281 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13468 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g16621 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g20293 No alias histone demethylase *(KDM3) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g23114 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09074 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g20572 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03237 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g05543 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene40711.t1 Aspi01Gene40711 histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene42684.t1 Aspi01Gene42684 histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0548.g076441 No alias histone demethylase *(KDM3) & original description: CDS=709-3096 0.05 OrthoFinder output from all 47 species
Cba_g04079 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.06G031200.1 Ceric.06G031200 histone demethylase *(KDM3) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.11G069000.1 Ceric.11G069000 histone demethylase *(KDM3) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.21G018000.1 Ceric.21G018000 histone demethylase *(KDM3) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.21G078400.1 Ceric.21G078400 histone demethylase *(KDM3) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.23G014800.1 Ceric.23G014800 histone demethylase *(KDM3) & original description:... 0.04 OrthoFinder output from all 47 species
Cre10.g446850 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 OrthoFinder output from all 47 species
Dac_g14457 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g12281 No alias histone demethylase *(KDM3) & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g41882 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g12667 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07685 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17375 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g22540.1 LOC_Os03g22540 histone demethylase (KDM3). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
LOC_Os03g31594.1 LOC_Os03g31594 histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Len_g08650 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12082 No alias histone demethylase *(KDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g14814 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18303 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04275 No alias histone demethylase *(KDM3) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g40363 No alias histone demethylase *(KDM3) & original description: none 0.05 OrthoFinder output from all 47 species
MA_10189726g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
MA_103030g0010 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.06 OrthoFinder output from all 47 species
Mp3g05610.1 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Msp_g19356 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g20297 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g25890 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25616 No alias histone demethylase *(KDM3) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g30156 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g45466 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02849 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g15776 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04006 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31029 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g41358 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019833 No alias histone demethylase *(KDM3) & original description: CDS=452-4519 0.02 OrthoFinder output from all 47 species
Solyc02g078790.4.1 Solyc02g078790 histone demethylase (KDM3). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
Solyc03g083240.4.1 Solyc03g083240 histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Spa_g07604 No alias auxiliary component *(JMJ24) of COMPASS histone... 0.02 OrthoFinder output from all 47 species
Spa_g21917 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g48969 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10184 No alias histone demethylase *(KDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12985 No alias histone demethylase *(KDM3) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e025393_P001 Zm00001e025393 histone demethylase (KDM3). transcription factor (JUMONJI) 0.04 OrthoFinder output from all 47 species
Zm00001e035224_P001 Zm00001e035224 histone demethylase (KDM3) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003347 JmjC_dom 761 866
IPR014977 WRC_dom 50 87
No external refs found!