Sam_g51389


Description : not classified & original description: none


Gene families : OG0001632 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001632_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g51389
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Adi_g060400 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g103669 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g04697 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15956 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g29756 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g27121 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0072.g036895 No alias not classified & original description: CDS=35-2200 0.03 OrthoFinder output from all 47 species
Cba_g20205 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g25318 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g20560 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11948 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g31038 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19784 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g12406 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g54002 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07773 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140612 DNA damage sensor activity IEP HCCA
MF GO:0140664 ATP-dependent DNA damage sensor activity IEP HCCA
InterPro domains Description Start Stop
IPR005135 Endo/exonuclease/phosphatase 170 684
No external refs found!