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  5. Lfl_g30488

Lfl_g30488 (PAT1)


Aliases : PAT1

Description : GRAS-type transcription factor & original description: none


Gene families : OG0000550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000550_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g30488
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00088p00161000 PAT1,... RNA biosynthesis.transcriptional activation.GRAS... 0.02 OrthoFinder output from all 47 species
AT1G50600 SCL5 scarecrow-like 5 0.03 OrthoFinder output from all 47 species
AT4G17230 SCL13 SCARECROW-like 13 0.03 OrthoFinder output from all 47 species
Adi_g085312 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g108349 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g50028 PAT1 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g01362 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g26689 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene64634.t1 PAT1, Aspi01Gene64634 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g22814 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12997 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05994 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01007007001 SCL21 RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
GSVIVT01010007001 SCL1 RNA biosynthesis.transcriptional activation.GRAS... 0.02 OrthoFinder output from all 47 species
GSVIVT01014570001 PAT1 RNA biosynthesis.transcriptional activation.GRAS... 0.04 OrthoFinder output from all 47 species
GSVIVT01037777001 PAT1 RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
LOC_Os07g36170.2 PAT1, LOC_Os07g36170 transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
LOC_Os07g39470.1 PAT1, LOC_Os07g39470 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Len_g12269 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
MA_10432093g0010 PAT1 transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
Nbi_g10124 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g19162 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g37437 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g10322 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04572 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16566 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g014830.3.1 SCL13, Solyc04g014830 transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
Solyc04g064550.1.1 SCL1, Solyc04g064550 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Solyc05g054170.4.1 SCL13, Solyc05g054170 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Solyc06g035620.3.1 PAT1, Solyc06g035620 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Solyc07g063940.2.1 PAT1, Solyc07g063940 transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
Solyc11g012510.3.1 SCL13, Solyc11g012510 transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
Solyc12g005340.3.1 PAT1, Solyc12g005340 transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
Tin_g04128 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 224 593
No external refs found!