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  5. Sam_g50907

Sam_g50907


Description : not classified & original description: none


Gene families : OG0006886 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006886_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g50907

Target Alias Description ECC score Gene Family Method Actions
AT3G13180 No alias NOL1/NOP2/sun family protein / antitermination NusB... 0.02 OrthoFinder output from all 47 species
Azfi_s0292.g063407 No alias not classified & original description: CDS=68-1600 0.03 OrthoFinder output from all 47 species
Ceric.10G067000.1 Ceric.10G067000 not classified & original description: pacid=50612186... 0.03 OrthoFinder output from all 47 species
Dcu_g12857 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g01522 No alias RsmB-type rRNA methyltransferase & original description: none 0.04 OrthoFinder output from all 47 species
Len_g24104 No alias RsmB-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Mp4g02490.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g39122 No alias RsmB-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc12g015710.2.1 Solyc12g015710 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e010024_P001 Zm00001e010024 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0004109 coproporphyrinogen oxidase activity IEP HCCA
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0019238 cyclohydrolase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006027 NusB_RsmB_TIM44 98 202
IPR001678 MeTrfase_RsmB/NOP2 330 390
No external refs found!