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  5. Sam_g50900

Sam_g50900


Description : CENH3-recruitment factor *(KNL2) & original description: none


Gene families : OG0002725 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002725_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g50900

Target Alias Description ECC score Gene Family Method Actions
Adi_g059248 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene16109.t1 Aspi01Gene16109 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75945 No alias CENH3-recruitment factor *(KNL2) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.14G056500.1 Ceric.14G056500 CENH3-recruitment factor *(KNL2) & original description:... 0.02 OrthoFinder output from all 47 species
Gb_19121 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os01g34610.1 LOC_Os01g34610 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os04g28050.1 LOC_Os04g28050 CENH3-recruitment factor (KNL2/Mis18) 0.03 OrthoFinder output from all 47 species
Sam_g29931 No alias CENH3-recruitment factor *(KNL2) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0031491 nucleosome binding IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR015216 SANTA 188 277
No external refs found!