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  5. Sam_g50849

Sam_g50849


Description : component *(MED34) of MEDIATOR transcription co-activator complex & original description: none


Gene families : OG0000844 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g50849
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
Adi_g085938 MED34, ATRECQ2, RECQL2 component *(MED34) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Cba_g37588 RecQl3, ATRECQ3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.17G060200.1 ATRECQ4A,... helicase component *(RecQ4A) of RTR Holliday junction... 0.02 OrthoFinder output from all 47 species
Ceric.30G003800.1 RecQl3, ATRECQ3,... not classified & original description: pacid=50608389... 0.04 OrthoFinder output from all 47 species
Dac_g16350 RecQl3, ATRECQ3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06356 MED34, ATRECQ2, RECQL2 component *(MED34) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
LOC_Os11g48090.5 MED34, ATRECQ2,... component MED34 of MEDIATOR transcription co-activator complex 0.02 OrthoFinder output from all 47 species
Lfl_g31337 RECQI1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp4g16510.1 RECQI1 ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ppi_g41947 MED34, ATRECQ2, RECQL2 component *(MED34) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003873 6-phosphofructo-2-kinase activity IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006000 fructose metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008443 phosphofructokinase activity IEP HCCA
MF GO:0019200 carbohydrate kinase activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 309 411
IPR002121 HRDC_dom 615 679
IPR032284 RecQ_Zn-bd 424 480
IPR018982 RQC_domain 487 598
IPR011545 DEAD/DEAH_box_helicase_dom 97 263
No external refs found!