1. Home
  2. Species
  3. Salvinia molesta
  4. Sequence
  5. Sam_g50711

Sam_g50711


Description : RNA splicing factor *(SCL28/30/33) & original description: none


Gene families : OG0001193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001193_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g50711
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AT1G55310 SR33, At-SCL33,... SC35-like splicing factor 33 0.03 OrthoFinder output from all 47 species
AT3G55460 SCL30, At-SCL30 SC35-like splicing factor 30 0.03 OrthoFinder output from all 47 species
AT5G18810 At-SCL28, SCL28 SC35-like splicing factor 28 0.02 OrthoFinder output from all 47 species
Als_g08232 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g09308 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000402.16 At-SCL30A, SCL30A RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder output from all 47 species
Dcu_g03569 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07366 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01022010001 At-SCL28, SCL28 RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
LOC_Os03g24890.1 At-SCL28, SCL28,... SCL28/30/33 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Lfl_g10747 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g35690 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g10815 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004666 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original... 0.04 OrthoFinder output from all 47 species
Solyc01g080660.3.1 At-SCL28, SCL28,... SCL28/30/33 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Tin_g05076 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g46163 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 38 108
No external refs found!