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  5. Sam_g50553

Sam_g50553


Description : proteasome core particle assembly factor *(PA200) & original description: none


Gene families : OG0001792 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001792_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g50553

Target Alias Description ECC score Gene Family Method Actions
Ala_g02718 PA200 proteasome core particle assembly factor *(PA200) &... 0.02 OrthoFinder output from all 47 species
Als_g01986 PA200 proteasome core particle assembly factor *(PA200) &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene50963.t1 PA200, Aspi01Gene50963 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34995 PA200 proteasome core particle assembly factor *(PA200) &... 0.02 OrthoFinder output from all 47 species
Lfl_g35781 PA200 proteasome core particle assembly factor *(PA200) &... 0.02 OrthoFinder output from all 47 species
Nbi_g26780 PA200 proteasome core particle assembly factor *(PA200) &... 0.03 OrthoFinder output from all 47 species
Ore_g17276 PA200 proteasome core particle assembly factor *(PA200) &... 0.04 OrthoFinder output from all 47 species
Pnu_g06937 PA200 proteasome core particle assembly factor *(PA200) &... 0.03 OrthoFinder output from all 47 species
Spa_g07611 PA200 proteasome core particle assembly factor *(PA200) &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR021843 PSME4_C 1718 1802
IPR032430 Blm10_mid 321 524
IPR032430 Blm10_mid 525 821
No external refs found!