Sam_g50406

Description : subfamily ABCC transporter & original description: none

Gene families : OG0000037 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g50406

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000718.1	AtABCC2, ABCC2,...	ABC transporter C family member 2 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001254.8	MRP10, ATMRP10, ABCC14	No description available	0.01	OrthoFinder output from all 47 species
Cre04.g228650	AtABCC2, ABCC2,...	Solute transport.primary active transport.ABC...	0.01	OrthoFinder output from all 47 species
GSVIVT01018403001	MRP9, ABCC9, ATMRP9	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
LOC_Os05g10730.1	MRP6, ATMRP6,...	subfamily ABCC transporter	0.02	OrthoFinder output from all 47 species
Len_g52285	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g08921	MRP6, ATMRP6, ABCC8	subfamily ABCC transporter & original description: none	0.02	OrthoFinder output from all 47 species
MA_211762g0010	MRP10, ATMRP10, ABCC14	ABC transporter C family member 14 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Mp5g06790.1	ABCC1, ATABCC1,...	subfamily ABCC transporter	0.02	OrthoFinder output from all 47 species
Zm00001e036442_P001	ATMRP14, ABCC10,...	subfamily ABCC transporter	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	115	370
IPR011527	ABC1_TM_dom	771	1028
IPR003439	ABC_transporter-like_ATP-bd	487	622
IPR003439	ABC_transporter-like_ATP-bd	1100	1250

External Links

No external refs found!