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  5. Sam_g50135

Sam_g50135


Description : ppGpp synthetase *(CRSH) & original description: none


Gene families : OG0003616 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003616_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g50135
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
Aob_g16932 ATCRSH, CRSH ppGpp synthetase *(CRSH) & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g17677 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g26038 ATCRSH, CRSH ppGpp synthetase *(CRSH) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.30G071200.1 Ceric.30G071200 not classified & original description: pacid=50608643... 0.07 OrthoFinder output from all 47 species
Dac_g36475 ATCRSH, CRSH ppGpp synthetase *(CRSH) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g02034 ATCRSH, CRSH ppGpp synthetase *(CRSH) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g01695 ATCRSH, CRSH ppGpp synthetase *(CRSH) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01017689001 ATCRSH, CRSH Probable GTP diphosphokinase CRSH, chloroplastic... 0.07 OrthoFinder output from all 47 species
LOC_Os05g06890.1 ATCRSH, CRSH,... Probable GTP diphosphokinase CRSH1, chloroplastic... 0.02 OrthoFinder output from all 47 species
Nbi_g10383 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06700 ATCRSH, CRSH ppGpp synthetase *(CRSH) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g14655 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23137 ATCRSH, CRSH ppGpp synthetase *(CRSH) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e031121_P001 ATCRSH, CRSH,... Probable GTP diphosphokinase CRSH1, chloroplastic... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 663 716
IPR007685 RelA_SpoT 492 618
IPR019734 TPR_repeat 1169 1188
No external refs found!